PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2425s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 310aa    MW: 35596.6 Da    PI: 7.2342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2425s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.36.2e-1991362128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                              +G+rF+P d+elv++yL +kv++  ++ +  ++++diy ++P ++  + ++ + ++++fF++ +kk++  +r+  a   ++W+   
  SapurV1A.2425s0030.1.p   9 CRGYRFSPYDQELVKYYLYPKVTNPLFTPSAPVRDCDIYAYQPLQIWnAFHRIHGEDVFFFTNLKKKSN-VTRQI-AGGPATWRRED 93 
                             68**********************99988788**************73444557789999999888753.33333.445679***** PP

                     NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk+  ++   + +++ ++k + +   r+p  + ++W+m ey+l
  SapurV1A.2425s0030.1.p  94 RDKDFSVTiddHCSVTATRKGFSYK-SREPGHHGCRWTMYEYSL 136
                             *999888766566668999999986.8999999*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-196151IPR003441NAC domain
PROSITE profilePS5100524.0448151IPR003441NAC domain
PfamPF023657.0E-1411136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFSPQNLCR GYRFSPYDQE LVKYYLYPKV TNPLFTPSAP VRDCDIYAYQ PLQIWNAFHR  60
IHGEDVFFFT NLKKKSNVTR QIAGGPATWR REDRDKDFSV TIDDHCSVTA TRKGFSYKSR  120
EPGHHGCRWT MYEYSLPSLS EVTVLCQLRR KDGSKSRPQK ARKRKGDSKS RPQKTRKRRR  180
QDFGDATNTT SQKARVGDHQ GYDQQQITAP AESSESGIVY NGVRFDNLES FSHAFLQDFD  240
NDQMAASMKE EEEDYYREIL GLLHGSDLAD GVPSIQTTPE ADANPSCLVQ ENEVEMICNS  300
LPMEHPYGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162179KRKGDSKSRPQKTRKRRR
2175179RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169131e-117AC216913.1 Populus trichocarpa clone POP030-J10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305976.21e-128hypothetical protein POPTR_0004s10720g
TrEMBLB9H3U01e-128B9H3U0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s10720.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.17e-13NAC-domain protein 101